publications

@article{Piersanti2025,
  Author = {Roberto Piersanti and Ryan Bradley and Syed Yusuf
Ali and Alfio Quarteroni and Luca Dedè and Natalia
A. Trayanova},
  Title = {Defining myocardial fiber bundle architecture in
atrial digital twins},
  Journal = {Computers in Biology and Medicine},
  Year = {2025},
  Volume = {188},
  Pages = {109774},
  URL = {https://www.sciencedirect.com/science/article/pii
/S0010482525001246},
  DOI = {https://doi.org/10.1016/j.compbiomed.2025.109774},
}

@article{Sakata2024a,
  Author = {Sakata, Kensuke and Bradley, Ryan P. and Prakosa,
Adityo and Yamamoto, Carolyna A. P. and Ali, Syed
Yusuf and Loeffler, Shane and Tice, Brock M. and
Boyle, Patrick M. and Kholmovski, Eugene G. and
Yadav, Ritu and Sinha, Sunil Kumar and Marine,
Joseph E. and Calkins, Hugh and Spragg, David D.
and Trayanova, Natalia A.},
  Title = {Assessing the arrhythmogenic propensity of
fibrotic substrate using digital twins to inform a
mechanisms-based atrial fibrillation ablation
strategy},
  Journal = {Nature Cardiovascular Research},
  Year = {2024},
  Volume = {3},
  Number = {7},
  Pages = {857--868},
  URL = {https://doi.org/10.1038/s44161-024-00489-x},
  DOI = {10.1038/s44161-024-00489-x},
}

@article{Parihar2024a,
  Author = {Kshitiz Parihar and Seung-Hyun B. Ko and Ryan P.
Bradley and Phillip Taylor and N. Ramakrishnan and
Tobias Baumgart and Wei Guo and Valerie M. Weaver
and Paul A. Janmey and Ravi Radhakrishnan},
  Title = {Asymmetric crowders and membrane morphology at
the nexus of intracellular trafficking and
oncology},
  Journal = {Mechanobiology in Medicine},
  Year = {2024},
  Volume = {2},
  Number = {3},
  Pages = {100071},
  URL = {https://www.sciencedirect.com/science/article/pii
/S2949907024000342},
  DOI = {https://doi.org/10.1016/j.mbm.2024.100071},
}

@article{Sakata2024,
  Author = {Sakata, Kensuke and Bradley, Ryan P. and Prakosa,
Adityo and Yamamoto, Carolyna A. P. and Ali, Syed
Yusuf and Loeffler, Shane and Kholmovski, Eugene
G. and Sinha, Sunil Kumar and Marine, Joseph E.
and Calkins, Hugh and Spragg, David D. and
Trayanova, Natalia A.},
  Title = {{Optimizing the Distribution of Ablation Lesions
to Prevent Postablation Atrial Tachycardia}},
  Journal = {JACC: Clinical Electrophysiology},
  Year = {2024},
  Volume = {10},
  Number = {11},
  Pages = {2347-2358},
  URL = {https://www.jacc.org/doi/abs/10.1016/j.jacep.2024
.07.002},
  DOI = {10.1016/j.jacep.2024.07.002},
}

@article{Eckmann2020,
  Author = {Eckmann, David M. and Bradley, Ryan P. and Kandy,
Sreeja K. and Patil, Keshav and Janmey, Paul A.
and Radhakrishnan, Ravi},
  Title = {Multiscale modeling of protein membrane
interactions for nanoparticle targeting in drug
delivery},
  Journal = {Current Opinion in Structural Biology},
  Year = {2020},
  Volume = {64},
  Pages = {104-110},
  URL = {https://www.sciencedirect.com/science/article/pii
/S0959440X20301226},
  DOI = {https://doi.org/10.1016/j.sbi.2020.06.023},
}

@article{Fatunmbi2020,
  Author = {Fatunmbi, Ololade and Bradley, Ryan P. and Kandy,
Sreeja Kutti and Bucki, Robert and Janmey, Paul A.
and Radhakrishnan, Ravi},
  Title = {A multiscale biophysical model for the
recruitment of actin nucleating proteins at the
membrane interface},
  Journal = {Soft Matter},
  Year = {2020},
  Volume = {16},
  Pages = {4941-4954},
  URL = {http://dx.doi.org/10.1039/D0SM00267D},
  DOI = {10.1039/D0SM00267D},
}

@article{Fatunmbi-2020,
  Author = {Fatunmbi, Ololade* and Bradley, Ryan* and Kutti
Kandy, Sreeja and Bucki, Robert and Janmey, Paul
A. and Radhakrishnan, Ravi},
  Title = {A multiscale biophysical model for the
recruitment of actin nucleating proteins at the
membrane interface},
  Journal = {Soft Matter},
  Year = {2020},
  Volume = {16},
  Pages = {4941--4954},
  URL = {https://doi.org/10.1039/D0SM00267D},
  DOI = {10.1039/D0SM00267D},
}

@article{Bradley-2020,
  Author = {Bradley, Ryan P.* and Slochower*, David R. and
Janmey, Paul A. and Radhakrishnan, R.},
  Title = {Divalent cations bind to phosphoinositides to
induce ion and isomer specific propensities for
nano-cluster initiation in bilayer membranes},
  Journal = {Royal Society Open Science},
  Year = {2020},
  Volume = {7},
  Number = {5},
  Pages = {192208},
  URL = {https://doi.org/10.1098/rsos.192208},
  DOI = {10.1098/rsos.192208},
}

@article{Farokhirad-2019,
  Author = {Farokhirad, Samaneh and Bradley, Ryan and
Radhakrishnan, Ravi},
  Title = {Thermodynamic analysis of multivalent binding of
functionalized nanoparticles to membrane surface
reveals the importance of membrane entropy and
nanoparticle entropy in adhesion of flexible
nanoparticles},
  Journal = {Soft Matter},
  Year = {2019},
  URL = {http://dx.doi.org/10.1039/C9SM01653H},
  DOI = {10.1039/C9SM01653H},
}

@article{Manalo-2019,
  Author = {Manalo, Kevin and Baber, Levi and Bradley, Ryan
and You, Zhi-Qiang and Zhang, Nuyun},
  Title = {{Community Collections: A Framework for Openly
Sharing Software Stacks Across Research Computing
Centers Using Singularity and Lmod}},
  Year = {2019},
  Pages = {{6:1--6:6}},
  URL = {http://doi.acm.org/10.1145/3332186.3332199},
  DOI = {10.1145/3332186.3332199},
}

@article{Bucki-2019,
  Author = {Bucki, Robert and Wang, Yu-Hsiu and Yang,
Changsong and Kandy, Sreeja K. and Fatunmbi,
Ololade and Bradley, Ryan and Pogoda, Katarzyna
and Svitkina, Tatyana and Radhakrishnan, Ravi and
Janmey, Paul A.},
  Title = {{Lateral distribution of phosphatidylinositol
4,5-bisphosphate in membranes regulates formin-and
ARP2/3-mediated actin nucleation}},
  Journal = {Journal of Biological Chemistry},
  Year = {2019},
  Volume = {294},
  Number = {12},
  Pages = {4704--4722},
  URL = {http://www.jbc.org/content/294/12/4704},
  DOI = {10.1074/jbc.RA118.005552},
}

@article{Ramakrishnan-2018,
  Author = {Ramakrishnan, N. and Bradley, Ryan P. and
Tourdot, Richard W. and Radhakrishnan, Ravi},
  Title = {Biophysics of membrane curvature remodeling at
molecular and mesoscopic lengthscales},
  Journal = {Journal of Physics: Condensed Matter},
  Year = {2018},
  Volume = {30},
  Number = {27},
  Pages = {273001},
  DOI = {10.1088/1361-648X/aac702},
}

@article{Farokhirad-2017,
  Author = {Farokhirad, Samaneh and Bradley, Ryan P. and
Sarkar, Arijit and Shi, Andrew and Telesco,
Shannon and Liu, Yingting and Venkatramani,
Ravindra and Eckmann, David M. and Ayyaswamy,
Portonovo S. and Radhakrishnan, Ravi},
  Title = {{Comprehensive Biomaterials II}},
  Year = {2017},
  Pages = {245--267},
  URL = {https://doi.org/10.1016/B978-0-12-803581-8.10216-
4},
  DOI = {10.1016/B978-0-12-803581-8.10216-4},
}

@article{Bradley-2016,
  Author = {Ryan Bradley and Ravi Radhakrishnan},
  Title = {Curvature-undulation coupling as a basis for
curvature sensing and generation in bilayer
membranes},
  Journal = {Proceedings of the National Academy of Sciences},
  Year = {2016},
  Volume = {113},
  Number = {35},
  Pages = {E5117--E5124},
  URL = {http://www.pnas.org/content/early/2016/08/15/1605
259113},
  DOI = {10.1073/pnas.1605259113},
}

@article{Tourdot-2014,
  Author = {Tourdot, Richard W.* and Bradley, Ryan P.* and
Ramakrishnan, N. and Radhakrishnan, Ravi (*these
authors contributed equally)},
  Title = {Multiscale computational models in physical
systems biology of intracellular trafficking},
  Journal = {IET Systems Biology},
  Year = {2014},
  Volume = {8},
  Number = {5},
  Pages = {198--213},
  URL = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC43361
66/},
}

@article{Bradley-2013,
  Author = {Bradley, Ryan and Radhakrishnan, Ravi},
  Title = {{Coarse-Grained Models for Protein-Cell Membrane
Interactions}},
  Journal = {Polymers},
  Year = {2013},
  Volume = {5},
  Number = {3},
  Pages = {890--936},
  URL = {http://search.ebscohost.com/login.aspx?direct=tru
e&db=a2h&AN=90506611&site=ehost-live},
}

@article{Zhao-2013,
  Author = {Zhao, Yuting and Liu, Jianglan and Yang,
Changsong and Capraro, Benjamin R. and Baumgart,
Tobias and Bradley, Ryan P. and Ramakrishnan, N.
and Xu, Xiaowei and Radhakrishnan, Ravi and
Svitkina, Tatyana and Guo, Wei},
  Title = {{Exo70 Generates Membrane Curvature for
Morphogenesis and Cell Migration}},
  Journal = {Developmental Cell},
  Year = {2013},
  Volume = {26},
  Number = {3},
  Pages = {266--278},
  URL = {http://linkinghub.elsevier.com/retrieve/pii/S1534
580713004152},
}

@article{Liu-2011,
  Author = {Liu, Jin and Bradley, Ryan and Eckmann, David M.
and Ayyaswamy, Portonovo S. and Radhakrishnan,
Ravi},
  Title = {Multiscale modeling of functionalized
nanocarriers in targeted drug delivery},
  Journal = {Current Nanoscience},
  Year = {2011},
  Volume = {7},
  Number = {5},
  Pages = {727},
  URL = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC32214
69/},
}